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This PR adds a new commonMain runtime API that orchestrates agents, substrate, particles, flow, waveform, emitters, and camera through a deterministic update(dt) loop. It introduces SceneConfiguration and SceneSnapshot models (including content-based equality for array-backed snapshot data) plus runtime tests for determinism, subsystem opt-out, and frame progression. It also injects optional Random instances into CognitiveChoreographer and FlowLayer to make seeded orchestration deterministic without breaking existing callers. A migration guide is included at docs/COGNITIVE_SCENE_RUNTIME_MIGRATION.md, and ktlintFormat/jvmTest were run.